Long pages

Showing below up to 50 results in range #1 to #50.

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  1. (hist) ‎Literature Studies ‎[22,230 bytes]
  2. (hist) ‎TEMPLATE ‎[14,311 bytes]
  3. (hist) ‎DMRcaller: a versatile R/Bioconductor package for detection and visualization of differentially methylated regions in CpG and non-CpG contexts ‎[10,469 bytes]
  4. (hist) ‎Gene set analysis methods: a systematic comparison ‎[6,682 bytes]
  5. (hist) ‎MethCP: Differentially Methylated Region Detection with Change Point Models (bioRxiv) ‎[6,606 bytes]
  6. (hist) ‎A general modular framework for gene set enrichment analysis ‎[6,266 bytes]
  7. (hist) ‎Fast derivatives of likelihood functionals for ODE based models using adjoint-state method ‎[6,211 bytes]
  8. (hist) ‎Benchmarking optimization methods for parameter estimation in large kinetic models ‎[5,304 bytes]
  9. (hist) ‎Lessons Learned from Quantitative Dynamical Modeling in Systems Biology ‎[4,674 bytes]
  10. (hist) ‎Comparing gene set analysis methods on single-nucleotide polymorphism data from Genetic Analysis Workshop 16 ‎[4,351 bytes]
  11. (hist) ‎Defiant: (DMRs: easy, fast, identification and ANnoTation) identifies differentially Methylated regions from iron-deficient rat hippocampus ‎[4,106 bytes]
  12. (hist) ‎Optimization and profile calculation of ODE models using second order adjoint sensitivity analysis ‎[3,552 bytes]
  13. (hist) ‎Performance of objective functions and optimization procedures for parameter estimation in system biology models ‎[2,825 bytes]
  14. (hist) ‎Accounting for the Multiple Natures of Missing Values in Label-Free Quantitative Proteomics Data Sets to Compare Imputation Strategies ‎[2,763 bytes]
  15. (hist) ‎Hierarchical optimization for the efficient parametrization of ODE models ‎[2,609 bytes]
  16. (hist) ‎A comparison of methods for quantifying prediction uncertainty in systems biology ‎[2,506 bytes]
  17. (hist) ‎Toward a gold standard for benchmarking gene set enrichment analysis ‎[2,449 bytes]
  18. (hist) ‎Benchmark problems for dynamic modeling of intracellular processes ‎[2,407 bytes]
  19. (hist) ‎Hybrid optimization method with general switching strategy for parameter estimation ‎[2,405 bytes]
  20. (hist) ‎Comparison of statistical methods for classification of ovarian cancer using mass spectrometry data ‎[2,147 bytes]
  21. (hist) ‎Evaluation of Derivative-Free Optimizers for Parameter Estimation in Systems Biology ‎[2,068 bytes]
  22. (hist) ‎Guidelines for Summarizing a Literature Study ‎[2,048 bytes]
  23. (hist) ‎DMRfinder: efficiently identifying differentially methylated regions from MethylC-seq data ‎[1,864 bytes]
  24. (hist) ‎Review, evaluation, and discussion of the challenges of missing value imputation for mass spectrometry-based label-free global proteomics. ‎[1,849 bytes]
  25. (hist) ‎The effects of nonignorable missing data on label-free mass spectrometry proteomics experiments ‎[1,843 bytes]
  26. (hist) ‎Review, evaluation, and discussion of the challenges of missing value imputation for mass spectrometry-based label-free global proteomics ‎[1,804 bytes]
  27. (hist) ‎Predicting Breast Cancer Survivability Using Data Mining Techniques ‎[1,785 bytes]
  28. (hist) ‎Benchmark of data processing methods and machine learning models for gut microbiome-based diagnosis of inflammatory bowel disease ‎[1,667 bytes]
  29. (hist) ‎Peakbin selection in mass spectrometry data using a consensus approach with estimation of distribution algorithms ‎[1,650 bytes]
  30. (hist) ‎Simultaneous Improvement in the Precision, Accuracy and Robustness of Label-free Proteome Quantification by Optimizing Data Manipulation Chains ‎[1,645 bytes]
  31. (hist) ‎Improved Peak Detection and Deconvolution of Native Electrospray Mass Spectra from Large Protein Complexes ‎[1,638 bytes]
  32. (hist) ‎Evaluation of the microba community profiler for taxonomic profiling of metagenomic datasets from the human gut microbiome ‎[1,627 bytes]
  33. (hist) ‎Benchmarking microbiome transformations favors experimental quantitative approaches to address compositionality and sampling depth biases ‎[1,625 bytes]
  34. (hist) ‎Detecting and overcoming systematic bias in high-throughput screening technologies: a comprehensive review of practical issues and methodological solutions ‎[1,623 bytes]
  35. (hist) ‎An Automated Pipeline for High-Throughput Label-Free Quantitative Proteomics ‎[1,611 bytes]
  36. (hist) ‎Microbiome differential abundance methods produce different results across 38 datasets ‎[1,605 bytes]
  37. (hist) ‎Bioinformatics and Statistics: LC‐MS (/MS) Data Preprocessing for Biomarker Discovery ‎[1,604 bytes]
  38. (hist) ‎Performance Evaluation and Online Realization of Data-driven Normalization Methods Used in LC/MS based Untargeted Metabolomics Analysis ‎[1,603 bytes]
  39. (hist) ‎OpenMS: a flexible open-source software platform for mass spectrometry data analysis ‎[1,603 bytes]
  40. (hist) ‎A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling ‎[1,602 bytes]
  41. (hist) ‎Comprehensive evaluation of untargeted metabolomics data processing software in feature detection, quantification and discriminating marker selection ‎[1,602 bytes]
  42. (hist) ‎A systematic study of normalization methods for Infinium 450K methylation data using whole-genome bisulfite sequencing data ‎[1,601 bytes]
  43. (hist) ‎Identification and Correction of Additive and Multiplicative Spatial Biases in Experimental High-Throughput Screening ‎[1,601 bytes]
  44. (hist) ‎Accurate proteome-wide label-free quantification by delayed normalization and maximal peptide ratio extraction, termed MaxLFQ ‎[1,600 bytes]
  45. (hist) ‎A Comprehensive Survey of Statistical Approaches for Differential Expression Analysis in Single-Cell RNA Sequencing Studies ‎[1,599 bytes]
  46. (hist) ‎NormalyzerDE: Online Tool for Improved Normalization of Omics Expression Data and High-Sensitivity Differential Expression Analysis ‎[1,589 bytes]
  47. (hist) ‎MeltDB: a software platform for the analysis and integration of metabolomics experiment data ‎[1,589 bytes]
  48. (hist) ‎Evaluating supervised and unsupervised background noise correction in human gut microbiome data ‎[1,587 bytes]
  49. (hist) ‎Comprehensive benchmarking and ensemble approaches for metagenomic classifiers ‎[1,585 bytes]
  50. (hist) ‎Mockrobiota: a public resource for microbiome bioinformatics benchmarking ‎[1,584 bytes]

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