User contributions
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- 11:01, 25 February 2020 (diff | hist) . . (-105) . . Comprehensive benchmarking of Markov chain Monte Carlo methods for dynamical systems
- 11:01, 25 February 2020 (diff | hist) . . (+106) . . Comprehensive benchmarking of Markov chain Monte Carlo methods for dynamical systems
- 11:00, 25 February 2020 (diff | hist) . . (-75) . . Comprehensive benchmarking of Markov chain Monte Carlo methods for dynamical systems
- 11:00, 25 February 2020 (diff | hist) . . (-11) . . Literature Studies (→Results from Literature)
- 10:59, 25 February 2020 (diff | hist) . . (+139) . . Literature Studies (→Imputation methods for missing values)
- 10:58, 25 February 2020 (diff | hist) . . (-75) . . Hierarchical optimization for the efficient parametrization of ODE models (→General Information)
- 10:58, 25 February 2020 (diff | hist) . . (-1) . . Optimization and profile calculation of ODE models using second order adjoint sensitivity analysis (→Paper name)
- 10:57, 25 February 2020 (diff | hist) . . (-90) . . Optimization and profile calculation of ODE models using second order adjoint sensitivity analysis (→Optimization and profile calculation of ODE models using second order adjoint sensitivity analysis)
- 10:56, 25 February 2020 (diff | hist) . . (+1,518) . . N Recursive partitioning for missing data imputation in the presence of interaction effects. (Created page with " === Citation === Doove, L., Buuren, S. V., and Dusseldorp, E. (2014). Recursive partitioning for missing data imputation in the presence of interaction effects. Computational...")
- 10:55, 25 February 2020 (diff | hist) . . (+145) . . Hierarchical optimization for the efficient parametrization of ODE models (→Computational Efficiency)
- 10:55, 25 February 2020 (diff | hist) . . (+115) . . Literature Studies (→Imputation methods for missing values)
- 10:54, 25 February 2020 (diff | hist) . . (-9) . . Guidelines for Summarizing a Literature Study (→Template code)
- 10:53, 25 February 2020 (diff | hist) . . (+10) . . Literature Studies (→Results from Literature)
- 10:52, 25 February 2020 (diff | hist) . . (-5) . . Normalization regarding non-random missing values in high-throughput mass spectrometry data (current)
- 10:52, 25 February 2020 (diff | hist) . . (+1,569) . . N Normalization regarding non-random missing values in high-throughput mass spectrometry data (Created page with "__NUMBEREDHEADINGS__ == General information == Wang P, Tang H, Zhang H, Whiteaker J, Paulovich AG, Mcintosh M. Normalization regarding non-random missing values in high-throug...")
- 10:51, 25 February 2020 (diff | hist) . . (+428) . . N Performance of objective functions and optimization procedures for parameter estimation in system biology models (Created page with "__NUMBEREDHEADINGS__ == Performance of objective functions and optimisation procedures for parameter estimation in system biology models == Andrea Degasperi, Dirk Fey & Boris...")
- 10:51, 25 February 2020 (diff | hist) . . (-3) . . Review, evaluation, and discussion of the challenges of missing value imputation for mass spectrometry-based label-free global proteomics. (→General information)
- 10:50, 25 February 2020 (diff | hist) . . (+6) . . Review, evaluation, and discussion of the challenges of missing value imputation for mass spectrometry-based label-free global proteomics. (→General information)
- 10:50, 25 February 2020 (diff | hist) . . (+4) . . Literature Studies (→Identifying sets of features (e.g. gene set analyses))
- 10:50, 25 February 2020 (diff | hist) . . (+98) . . Literature Studies (→Preprocessing high-throughput data)
- 10:49, 25 February 2020 (diff | hist) . . (+42) . . Review, evaluation, and discussion of the challenges of missing value imputation for mass spectrometry-based label-free global proteomics. (→General information)
- 10:49, 25 February 2020 (diff | hist) . . (-106) . . Literature Studies (→ODE-based Modelling)
- 10:48, 25 February 2020 (diff | hist) . . (+31) . . Review, evaluation, and discussion of the challenges of missing value imputation for mass spectrometry-based label-free global proteomics. (→General information)
- 10:48, 25 February 2020 (diff | hist) . . (+388) . . N Optimization and profile calculation of ODE models using second order adjoint sensitivity analysis (Created page with "__NUMBEREDHEADINGS__ == Optimization and profile calculation of ODE models using second order adjoint sensitivity analysis == Paul Stapor, Fabian Fro¨ hlich1, and Jan Hasenau...")
- 10:47, 25 February 2020 (diff | hist) . . (-106) . . Review, evaluation, and discussion of the challenges of missing value imputation for mass spectrometry-based label-free global proteomics. (→General information)
- 10:45, 25 February 2020 (diff | hist) . . (+2) . . Literature Studies (→ODE-based Modelling)
- 10:45, 25 February 2020 (diff | hist) . . (+140) . . Parameter Estimation and Variable Selection for Big Systems of Linear Ordinary Differential Equations: A Matrix-Based Approach (→Paper name)
- 10:44, 25 February 2020 (diff | hist) . . (+156) . . Tracking for parameter and state estimation in possibly misspecified partially observed linear Ordinary Differential Equations (→Paper name)
- 10:43, 25 February 2020 (diff | hist) . . (+259) . . N Efficient computation of steady states in large-scale ODE models of biochemical reaction networks (Created page with "== Paper name == Lines, Glenn Terje, et al. "Efficient computation of steady states in large-scale ODE models of biochemical reaction networks." IFAC-PapersOnLine 52.26 (2019)...")
- 10:42, 25 February 2020 (diff | hist) . . (-5) . . Review, evaluation, and discussion of the challenges of missing value imputation for mass spectrometry-based label-free global proteomics. (→General information)
- 10:42, 25 February 2020 (diff | hist) . . (+1,899) . . N Review, evaluation, and discussion of the challenges of missing value imputation for mass spectrometry-based label-free global proteomics. (Created page with " == General information == (13) Webb-Robertson, B.-J. M.; Wiberg, H. K.; Matzke, M. M.; Brown, J. N.; Wang, J.; McDermott, J. E.; Smith, R. D.; Rodland, K. D.; Metz, T. O.; Po...")
- 10:42, 25 February 2020 (diff | hist) . . (+1) . . Help (→How to contribute to the Bechmark Wiki?) (current)
- 10:41, 25 February 2020 (diff | hist) . . (+28) . . Hierarchical optimization for the efficient parametrization of ODE models (→Convergence of optimizer)
- 10:41, 25 February 2020 (diff | hist) . . (+174) . . N Tracking for parameter and state estimation in possibly misspecified partially observed linear Ordinary Differential Equations (Created page with "== Paper name == Authors, title, year, journal, volume, pages etc in any possible citation style. [https://doi.org/10.1371/journal.pone.0074335: Permanent link to the paper]")
- 10:41, 25 February 2020 (diff | hist) . . (+4) . . Hierarchical optimization for the efficient parametrization of ODE models (→Summary)
- 10:41, 25 February 2020 (diff | hist) . . (+174) . . N Parameter Estimation and Variable Selection for Big Systems of Linear Ordinary Differential Equations: A Matrix-Based Approach (Created page with "== Paper name == Authors, title, year, journal, volume, pages etc in any possible citation style. [https://doi.org/10.1371/journal.pone.0074335: Permanent link to the paper]")
- 10:40, 25 February 2020 (diff | hist) . . (+378) . . Hierarchical optimization for the efficient parametrization of ODE models (→Study outcomes)
- 10:40, 25 February 2020 (diff | hist) . . (+223) . . N Benchmark problems for dynamic modeling of intracellular processes (Created page with "== Paper name == Hass, Helge, et al. "Benchmark problems for dynamic modeling of intracellular processes." Bioinformatics 35.17 (2019): 3073-3082. [https://doi.org/10.1093/bi...")
- 10:39, 25 February 2020 (diff | hist) . . (-80) . . Literature Studies (→ODE-based Modelling)
- 10:39, 25 February 2020 (diff | hist) . . (+1,509) . . N Prevention, diagnosis and treatment of high-throughput sequencing data pathologies (Created page with "__NUMBEREDHEADINGS__ == General information == Zhou X, Rokas A. Prevention, diagnosis and treatment of high‐throughput sequencing data pathologies. Molecular ecology. 2014 A...") (current)
- 10:39, 25 February 2020 (diff | hist) . . (-168) . . Literature Studies (→ODE-based Modelling)
- 10:38, 25 February 2020 (diff | hist) . . (+89) . . Literature Studies (→Preprocessing high-throughput data)
- 10:38, 25 February 2020 (diff | hist) . . (-1) . . Literature Studies (→ODE-based Modelling)
- 10:37, 25 February 2020 (diff | hist) . . (+248) . . N Fast derivatives of likelihood functionals for ODE based models using adjoint-state method (Created page with "__NUMBEREDHEADINGS__ == Paper name == Melicher, V., Haber, T. & Vanroose, W. [https://doi.org/10.1007/s00180-017-0765-8 Fast derivatives of likelihood functionals for ODE base...")
- 10:35, 25 February 2020 (diff | hist) . . (-262) . . Literature Studies (→ODE-based Modelling)
- 10:35, 25 February 2020 (diff | hist) . . (-59) . . Literature Studies (→ODE-based Modelling)
- 10:31, 25 February 2020 (diff | hist) . . (-318) . . Literature Studies (→ODE-based Modelling)
- 10:29, 25 February 2020 (diff | hist) . . (+1,601) . . N Identification and Correction of Additive and Multiplicative Spatial Biases in Experimental High-Throughput Screening (Created page with "__NUMBEREDHEADINGS__ == General information == Mazoure B, Caraus I, Nadon R, Makarenkov V. Identification and Correction of Additive and Multiplicative Spatial Biases in Exper...") (current)
- 10:28, 25 February 2020 (diff | hist) . . (+142) . . Literature Studies (→Preprocessing high-throughput data)
- 10:25, 25 February 2020 (diff | hist) . . (+108) . . Literature Studies (→Fabian)
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