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- Assessment of statistical methods from single cell, bulk RNA-seq, and metagenomics applied to microbiome data (1 revision)
- Comparison of metaheuristic strategies for peakbin selection in proteomic mass spectrometry data (1 revision)
- Distribution-based comprehensive evaluation of methods for differential expression analysis in metatranscriptomics (1 revision)
- Identification and Correction of Additive and Multiplicative Spatial Biases in Experimental High-Throughput Screening (1 revision)
- Performance Evaluation and Online Realization of Data-driven Normalization Methods Used in LC/MS based Untargeted Metabolomics Analysis (1 revision)
- Test title (1 revision)
- Benchmark of data processing methods and machine learning models for gut microbiome-based diagnosis of inflammatory bowel disease (1 revision)
- Identifying and quantifying metabolites by scoring peaks of GC-MS data (1 revision)
- 20 Benchmark Models: (1 revision - redirect page)
- Improved Peak Detection and Deconvolution of Native Electrospray Mass Spectra from Large Protein Complexes (1 revision)
- Mockrobiota: a public resource for microbiome bioinformatics benchmarking (1 revision)
- 20 Benchmark Problem for Modelling Intracellular Processes (1 revision - redirect page)
- Benchmarking Metagenomics Tools for Taxonomic Classification (1 revision)
- Comprehensive benchmarking and ensemble approaches for metagenomic classifiers (1 revision)
- Evaluating supervised and unsupervised background noise correction in human gut microbiome data (1 revision)
- Improved peak detection in mass spectrum by incorporating continuous wavelet transform-based pattern matching (1 revision)
- Preprocessing of tandem mass spectrometric data to support automatic protein identification (1 revision)
- The impact of sample imbalance on identifying differentially expressed genes (1 revision)
- A Comprehensive Survey of Statistical Approaches for Differential Expression Analysis in Single-Cell RNA Sequencing Studies (1 revision)
- Imputation in Proteomics: (1 revision - redirect page)
- Prevention, diagnosis and treatment of high-throughput sequencing data pathologies (1 revision)
- A benchmark of genetic variant calling pipelines using metagenomic short-read sequencing (1 revision)
- Benchmarking Quantitative Performance in Label-Free Proteomics (1 revision)
- Comprehensive evaluation of untargeted metabolomics data processing software in feature detection, quantification and discriminating marker selection (1 revision)
- Evaluation of preprocessing, mapping and postprocessing algorithms for analyzing whole genome bisulfite sequencing data (1 revision)
- LEMMI: a continuous benchmarking platform for metagenomics classifiers (1 revision)
- Project 20 Benchmark Models (1 revision - redirect page)
- Concepts for Bechmarking Studies: (1 revision)
- Evaluation of the microba community profiler for taxonomic profiling of metagenomic datasets from the human gut microbiome (1 revision)
- Benchmarking microbiome transformations favors experimental quantitative approaches to address compositionality and sampling depth biases (1 revision)
- DMR Calling from BSSEQ: (1 revision)
- A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling (1 revision)
- Benchmarking of 16S rRNA gene databases using known strain sequences (1 revision)
- Optimization and uncertainty analysis of ODE models using second order adjoint sensitivity analysis (1 revision)
- Funding (1 revision)
- Optimization of miRNA-seq data preprocessing (1 revision)
- A systematic study of normalization methods for Infinium 450K methylation data using whole-genome bisulfite sequencing data (1 revision)
- Bioinformatics and Statistics: LC‐MS (/MS) Data Preprocessing for Biomarker Discovery (1 revision)
- Review, evaluation, and discussion of the challenges of missing value imputation for mass spectrometry-based label-free global proteomics (1 revision)
- MeltDB: a software platform for the analysis and integration of metabolomics experiment data (1 revision)
- Accurate proteome-wide label-free quantification by delayed normalization and maximal peptide ratio extraction, termed MaxLFQ (1 revision)
- Data processing has major impact on the outcome of quantitative label-free LC-MS analysis (1 revision)
- MetaboAnalyst: a web server for metabolomic data analysis and interpretation (1 revision)
- Comparative evaluation of preprocessing freeware on chromatography/mass spectrometry data for signature discovery (1 revision)
- Comparative study of classifiers for human microbiome data (1 revision)
- Denoising the Denoisers: an independent evaluation of microbiome sequence error-correction approaches (1 revision)
- Microbiome differential abundance methods produce different results across 38 datasets (1 revision)
- Peak alignment using wavelet pattern matching and differential evolution (1 revision)
- Simultaneous Improvement in the Precision, Accuracy and Robustness of Label-free Proteome Quantification by Optimizing Data Manipulation Chains (1 revision)
- Analysing microbiome intervention design studies: Comparison of alternative multivariate statistical methods (1 revision)
