Catalyst: Fast and flexible modeling of reaction networks

1 Citation

Torkel E. Loman, Yingbo Ma, Vasily Ilin, Shashi Gowda, Niklas Korsbo, Nikhil Yewale, Chris Rackauckas, Samuel A. Isaacson, Catalyst: Fast and flexible modeling of reaction networks, 2023, Plos Computational Biology,

[1]

2 Summary

Julia-based simulation tool termed Catalyst

3 Study outcomes

They compare simulation runtimes with other tools.

3.1 Outcome O1

It is claimed that Catalyst is around one order of magnitude faster

4 Study design and evidence level

4.1 General aspects

At a quick glance, this benchmarking seems to very naive. Was integration accuracy considered?

4.2 Design for Outcome O1

• ...

5 Further comments and aspects

I only had a very quick look.